Special Pass on process and needed to leave Malaysia to travel home.

Hello!
My husband is currently on Malaysia. Due to negligence of his agency, his working visa has been renewed late. His visa has ended this 8/31/18 and his special pass is on process too. We never thought this would happen and we scheduled our honeymoon on 9/7-9/12. His flight back home is this 9/7, and we both have tickets to Kuala Lumpur this 9/12. He is scared that he cannot re enter to KL. It is a waste of money for us as we paid for tickets, accomodations and tours to our honeymoon in the Philippines.

Question:
1. Can he go home even his working visa is on process?
2. Will he able to re enter Malaysia on 9/12?
3. If yes, what are the needed documents?

Please help!

Hi, I think we are facing the same problem. May I know what you did on this matter? Thanks