employee card process - after applying

I would like to know what other people have been told on this. My application is being held up due to a bad form which is being corrected. My work was told that resubmitting the corrected form will probably restart the 30 day period (on the portal site). The problem is my 90 day passport stay in Schengen will end in 2 weeks.

My relocation company is telling me that I can legally stay past the 90 days. Does anyone know if this is true. I find it hard to believe. My work is trying to verify, but is having some difficulty.

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